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Bio181L Syllabus F08 (Click triangles to expand)
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 I. | Course description and goals
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 A. | Biology 181L is the laboratory companion course to the Bio 181R lecture course. The credit and grade for 181L is separate from the lecture. You are not required to take the two courses simultaneously, although it is highly beneficial to do so.
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 B. | This course is designed to deepen your acquaintance with the scientific approach and experimentation, as well as a range of fundamental biological concepts. Your level of involvement will dictate the benefit you receive from the course. Activities will include both 'wet' experiments and computer simulations, depending upon which format best engages the big ideas in an area of inquiry.
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 C. | Specific topics include the scientific approach; the nature of the molecular world and the structure and function of key macromolecules; detection of macromolecules and their state; capture, storage and release of energy; experimental investigation into the communication and development of a simple organism, AIDS transmission and detection
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 D. | Learning goals It is the purpose of these labs to enable you to...
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 1. | Understand the Tao of molecules (the four feels: greasy, positive, negative, hydrogen-positive and how they generate all of biology)
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 2. | Understand how molecules manifest in the macro world (color, odor, feel, behavior)
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 3. | Understand broad roles of classes of macromolecules and why each occupies its niche (DNA is info storage; protein is workhorse; lipids as compartment barriers, carbs and ATP as energy storage)
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 4. | Understand genetic information storage, packaging and flow
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 5. | Understand at least one protein from amino acids to health (how amino acids drive its structure and properties, how its properties provide its function, how its function allows life/health, and how changes in structure cause changes in health). Example: hemoglobin, opsin
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 6. | Understand the nature, flow and storage of energy in molecules
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 7. | Understand and become proficient in the rhythm method of science: hypothesis-model-test-refine-repeat
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 8. | Understand one biological process deeply and in detail (photosynthesis)
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 9. | Become proficient in the development of experimental design (defining an answerable question, identifying the adjuncts [controls] required to answer it)
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 E. | Basic mathematics and chemistry knowledge is assumed.
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 II. | Lab Administration (People)
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 1. | Hours: Mon & Tue 9-11:00 Wed* 12:00-1:50 Thurs* 9-1:50 Fri by appt. *First week of classes office will close at 1:50
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 A. | Biology 181 Lab Manual, 2008.
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 B. | access to a current 181R lecture textbook (Biological Science, 3d edition by Scott Freeman)
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 1. | You can find your individual instructor and details of their contact information as well as specific assignment information for your section at this site. Access to some materials will require you to know your UAnetID (the part of your email address before the @) as well as your section number.
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 D. | Essential software will be available from the course website for download and use on most modern, internet-connected Mac or Windows systems. You can access this material on computers in the BLC and in most cases, the Science Library and Main Library.
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 A. | It is essential to arrive at each class having read through and considered the background material for that session. In addition, always ask yourself, “Why am I doing this particular step in this procedure? What prediction am I testing? What will I ultimately learn when I am finished?” Many of these issues will be discussed prior to the start of the lab, but you and your group may be asked to present them or to lead the discussion--or they could be represented on a quiz--so come prepared.
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 V. | Absences and late work
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 A. | Laboratory attendance is required.
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 1. | Arrival more than 20 minutes late without a formal excuse constitutes missing the lab.
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 2. | If you miss a quiz because it starts on time and you don't, you receive a zero.
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 3. | All holidays or special events observed by organized religions will be honored for those students who show affiliation with that particular religion
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 B. | Absences will be excused for exceptional and verifiable reasons, but arrangements need to be made well in advance. When feasible, excused absences are made-up by attending your instructor’s other section, or another instructor’s section, and require an approval form from the lab administrator in BSE 109. Failure to make up the lab will result in zero points for all assignments associated with the lab.
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 C. | Assignments handed in late (except due to an excused absence)
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 1. | Your instructor may choose not to accept late assignments at all
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 2. | If accepted, are subject to a 10% credit deduction per school day; this penalty is assessed prior to grading. It is your responsibility to ensure that your instructor receives any work that is not handed in during class.
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 D. | If you miss and fail to attend make ups for more than two labs, (excused or not) you will be dropped from the course or given a failing grade
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 VI. | Assignments and Grading Policy (see also cheating; absences and late work)
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 A. | Ignorance of the existence of an assignment is no excuse. Even with an excused absence, it is your responsibility to be caught up as soon as possible. This may require you to make contact with your instructor instead of waiting until your next lab section.
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 B. | Assignment point values: Assessments & Quizzes: 15% Lab associated assignments (LABAs): 50% Photosynthesis report: 10% Slime mold proposal: 5% Slime mold outline: 5% Slime mold report: 10% Debate/Wildcard: 5%
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 1. | Assessments may be given at the beginning of the lab period or online between lab periods (or both). Their purpose is to help you synthesize course material and prepare for the upcoming lab.
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 2. | Your instructor may choose to have your group present the week's lab and assign a grade on the basis of your group's presentation
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 3. | On-line homeworks should be done by yourself. Unless your instructor indicates otherwise, on-line work is open book and open-web. Prior to doing an assignment, principles or basic understandings may be freely discussed, but any work for which you receive an individual score should be executed on your own unless explicitly indicated otherwise.
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 D. | Lab-associated assignments
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 1. | Homework assignments will generally be due the week after they are assigned; some may be completed in class. There will also be one in-class debate. These will be graded on completeness, clarity, succinctness, and comprehension of the material. Details about each will be provided by your instructor.
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 2. | These assignments will include tasks, such as solving a problem, written work, and combinations.
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 3. | In general, all assignments will be due at the start of class or at the time posted/announced.
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 1. | At the discretion of your instructor, there may be in-class opportunities to accumulate bonus points for participation and achievement in a selected exercise. If you accumulate sufficient points, your bonus score will be used to replace one quiz or Lab-associated assignment, as specified by your instructor.
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 F. | Grade cutoffs will be: A = 90%; B = 80%; C = 70%; D = 60%
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 G. | There may be a final assessment exam for the laboratories, but it will be scored in such a way that it either boosts your overall score or does not affect it.
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 H. | Re-grade Policy You may return assignments for a re-grade within one week of having them returned to you. Re-grade requests must be accompanied by a typed clarification of what was overlooked or in error the first time. Your instructor will re-examine the entire work, not just the area in question. The purpose of re-grades is to correct errors in your instructor’s understanding or scoring of your work, not to debate scoring policies. Note that a regrade constitutes new work on your part; an egregious mis-understanding demonstrated in your regrade request may cost you points.
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 I. | We reserve the right to adjust your scores upward based on exceptional participation and/or mastery of the course material as judged by your instructor.
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 A. | General: Integrity is expected of every student in all academic work. The guiding principle of academic integrity is that a student's submitted work must be the student's own. This principle is furthered by the Student Code of Conduct and disciplinary procedures established by ABOR Policies 5-308 - 5-403, all provisions of which apply to all University of Arizona students. For further information, please see: http://dos.web.arizona.edu/uapolicies/.
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 B. | Cheating/Plagiarism is an extremely serious matter and will be treated as such. Please note that possible responses to even a first instance of plagiarism include an 'E' for the course or expulsion from the university.
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 C. | See the contract on page vii of your lab manual for some guidance.
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 D. | Reports that are highly similar or that lack proper credit for sources of information, will be considered as cases of cheating and/or plagiarism. We strictly adhere to the University’s Code of Academic Integrity and Code of Student Conduct as presented in the University catalog and the Student Handbook (http://web.arizona.edu/~dos/uapolicies/cai1.html ). Therefore, any case of cheating or plagiarism will, at the very least, receive zero points for that assignment, and could result in your expulsion from the university. If you have any questions regarding how to properly cite a source for a scientific paper, resolve them with your instructor before you hand the assignment in.
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 1. | If you decide to take and continue in this course, you are agreeing to submit your papers online, when so instructed, to a plagiarism-prevention program called TurnItIn.com. When you set up your individual account with TurnItIn.com for this class, make sure you understand and consent to all the terms that the program provides you at that point. You should note that TurnItIn.com – always without your name and any personal information – will retain your paper as part of their database so that students who plagiarize from it can be detected. Because of this program, the vast majority of you who do your own work and cite your sources of information properly will not have to compete with students who commit undetected plagiarism. Anyone who has questions or problems with TurnItIn.com may talk privately about these with the instructor.
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 A. | Read the introductory sections of the Lab Manual and adhere to those rules. No food or drink is allowed in the lab. We cannot risk contaminating the lab materials, or worse yet, contaminating you! Points may be taken off the week's quiz or homework for failure to observe reasonable clean-up behavior. Do your share in keeping the common areas of the lab clean as well.
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 B. | Lab Safety These labs have been developed to minimize dangers posed to students. However, we occasionally use equipment or reagents that can cause injury, and accidents sometimes happen. Report any injury to the prep-room staff or your instructor immediately! Showers, eyewashes, fire extinguishers, and first-aid kits are present in case of an emergency. Closely follow your instructor’s instructions in the use of dangerous equipment, and in the disposal of all reagents and supplies.
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 C. | Decorum Your lab instructor is the authority in the room. Simple courtesy is expected of everyone in the room--there's never cause to yell or interrupt your peers or your instructor. Phones, mp3 players, etc. should be turned off throughout the lab. During your lab instructor's presentation, you're expected to listen attentively unless called on or participating in discussion. Computers are present in the labs for specific exercises which don't include checking e-mail, downloading the study guide for another course, or viewing human anatomy.
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 IX. | Problems or Questions
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 A. | If you have serious a problem with the lab or your instructor, make an appointment discuss it with your instructor first. In the exceptional circumstance where an understanding cannot be reached, you may petition the Assistant Lab Director for a resolution.
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 XI. | Special Accommodations
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 A. | If you anticipate the need for reasonable accommodations to meet the requirements of this course, you must register with the Disability Resource Center http://drc.arizona.edu/ and request that the DRC send your instructor official notification of your accommodations needs as soon as possible. Please plan to bring documentation to Annette Orozco and meet with your instructor by appointment or during office hours to discuss accommodations and how course requirements and activities may impact your ability to fully participate.
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